I create sketches, interactive prototypes and wireframing with annotations.
The software I use for prototyping are:
Axure – my primary choice
FlairBuilder, Balsamiq … and others.
Interactive prototype created for the final projects at UX Design Institute
The prototype is created in Axure RP 9
Prototype of Bear In Mind
View prototype: https://marvelapp.com/2065j4g
View the whole project Bear In Mind App